PLAN YOUR EXPERIMENT AND CHOOSE YOUR DETECTION METHOD
CHEMILUMINESCENT WESTERN BLOTTING
The most common method for Western blot detection is chemiluminescence. Detection by chemiluminescence is relatively sensitive and works well for detecting individual or low abundance proteins.
How it works
In chemiluminescent Western blots, a primary antibody is used to detect your protein of interest, followed by a species-specific secondary antibody to detect the primary antibody. The secondary antibody is conjugated to horseradish peroxidase (HRP), which catalyzes the oxidation of luminol to produce a product that emits light (luminescence). The light given off can be captured by film and developed in a darkroom, or it can be detected by a CCD camera using a digital imager.
FLUORESCENT WESTERN BLOTTING
Fluorescence Western blotting is beneficial when your experiment requires quantitation, particularly between different proteins in the same sample. Fluorescent methods are especially useful for detection of post-translationally modified versions of proteins, since the difference in molecular weight is often not enough for clear resolution on an average gel.
How it works
In fluorescent Western blots, the secondary antibody is conjugated to a dye molecule that can undergo fluorescence—meaning, it will give off light of a specific wavelength when excited with light of a shorter wavelength. Fluorophores are available in the visible or infrared (IR) spectrum. Because different fluorophores can give off light in different ranges, fluorescent Western blotting can be used to multiplex—meaning, different target proteins can be visualized on the same blot at the same time.
With fluorescence, you have the option of using secondary antibodies conjugated to fluorophores, or you can label your primary antibodies with fluorophores of your choice to perform direct Westerns.
CHEMILUMINESCENT OR FLUORESCENT WESTERN BLOTTING?
COMMON APPLICATIONS
Chemiluminescence
Checking protein purification
Presence or absence of one protein in a lysate
Detecting low abundance proteins
Fluorescence
Analyzing multiple proteins
Posttranslational modifications
Quantitative comparisons
2. SEPARATE
RESOLVE YOUR PROTEINS BY ELECTROPHORESIS AND TRANSFER TO A MEMBRANE
Is Western blotting required?
Some applications don’t require western blotting and can be done by directly staining proteins in the gel after separation.
Applications
Checking for a single band after protein purification.
AzureRed Fluorescent Protein Stain (AC2124) qualitatively stains gels for fluorescent imaging systems.
Choosing your membrane
The membrane provides a material that binds proteins as they move out of the gel matrix. The two common materials are nitrocellulose and PVDF.
Nitrocellulose (AC2106–AC2107)
For low molecular weight proteins
Typically used for chemi-applications
Not ideal for stripping
PVDF (AC2105, AC2108–AC2109)
High binding capacity is great for low-expression proteins
Typically used for fluorescence (less background autofluorescence)
High protein retention for stripping and reprobing
Setting up a good transfer
Proper transfer set-up involves a “sandwich” where gel and membrane are laid in direct contact between blotting paper, flanked by electrode plates. The transfer buffer allows current to flow between electrodes to carry proteins from gel to membrane.
Blotting paper (filter paper) provides consistent pressure so no gaps appear between membrane and gel while remaining absorbent enough for transfer buffer to penetrate the layers.
Azure Pre-cut Blotting Paper (AC2110–AC2111) adds efficiency to this sandwich set-up.
Azure Transfer Buffer (AC2127) is a proprietary formula designed for quick, high quality wet transfer and sensitive western blotting.
Before blotting
Verifying that total protein was sufficiently transferred from gel to the membrane is important when optimizing a transfer setup, condition, or experiment.
Ponceau staining can be used to visualize all protein on the membrane. After, the membrane can be destained for immediate western blotting.
Azure Ponceau Stain (AC2125) can ensure efficient transfer of proteins onto nitrocellulose or PVDF membranes.
Azure Opaque Incubation Trays (AC2120–AC2123) offer protection for light-sensitive membrane incubation. The surface is smoothed to prevent scratches and damage to membranes.
Azure Clear Incubation Trays (AC2150–AC253) allow protection of your blots, with a smoothed surface to prevent membrane damage and transparency for easy monitoring.
3. PROBE
BLOCK MEMBRANE AND PROBE FOR PROTEINS OF INTEREST WITH OPTIMIZED ANTIBODIES
Blocking the membrane
Blocking is important to prevent nonspecific background signals from interfering with your data.
Protein Free Blocking Buffer (AC2112) works best for purified proteins & antibodies with high cross reactivity with protein based blockers.
Fluorescent Blocking Buffer (AC2190) works best for cell lysates and low quality primary antibodies that require protein blockers.
Chemi Blot Blocking Buffer (AC2148) works best for chemiluminescent Western blots.
Need help getting started with fluorescent Western blotting? Check out the demo kit, page 8.
AzureSpectra Demo Kit (AC2172–AC2179)
Probe with antibody
Make sure concentrations for new antibodies are optimized.
Have a validated primary antibody? Try a direct Western by labeling your primary antibody with fluorescent dye.
AzureSpectra Labeling Kit (AC2185–AC2189) allows quick and easy labeling of primary antibodies–see more on page 7.
NEED TO REPROBE?
HRP Stripping buffer (AC2154) efficiently removes antibodies from your blot.
Scan for more information about our free substrate samples
Washing after incubations
It is essential to wash excess antibody off the membrane after each incubation to prevent background signal. For fluorescent blots, make sure to rinse off excess wash buffer containing detergent, since it can fluoresce.
Blot Washing Buffer (AC2113) works well for chemiluminescent HRP substrates and visible fluorescent blots.
Fluorescent Blot Washing Buffer (AC2145) works best with NIR fluorescent blots.
Azure HRP secondary antibodies (AC2114- AC2119, AC2149) offer a range of species specificities.
Fluorescent secondary antibodies (AC2128- AC2139, AC2156-71) come in visible and near IR fluorophores.
Chemiluminescence detection
Choose your HRP substrate:
Radiance (AC2101) produces a strong, long-lasting signal with extremely low background.
Radiance Plus (AC2103) is the most sensitive HRP substrate and allows you to detect bands not visualized with other substrates.
ChemiWriter ECL (AC2146) adsorbs to nitrocellulose and PVDF membranes, and reacts with HRP substrates to produce chemiluminescence.
Blot Development Folders (AC2126) protect your blot during imaging and keep it wet for longer lasting signal.
Fluorescence detection
Background Quenching Sheets (AC2144, AC2147) reduce background autofluorescence when imaging your fluorescent (or chemi) blot.
4. VISUALIZE
DETECT YOUR PROTEINS OF INTEREST BY CHEMILUMINESCENCE OR FLUORESCENCE
AZURE IMAGING SYSTEMS
The Azure Imaging Systems offers 6 unique Western blot imaging systems. Select which one fits your applications now, and learn more about upgrading later when your needs change.
Upgrades available for chemiluminescence, RGB fluorescence and NIR fluorescence.
Q Module—Upgrade the Azure 500 and Azure 300 to include a green fluorescence Q module to add a dedicated channel for total protein normalization in quantitative Western blots.
5. ANALYZE
ANALYZE YOUR DATA WITH EASY-TO-USE SOFTWARE TO GET THE ANSWERS YOU NEED
AZURESPOT PRO ANALYSIS
AzureSpot Pro helps you interpret your data easily and accurately. Analyze your gels and blots in either manual or automatic modes.
Automatically detect bands, even on distorted gels, and apply your selected method of background correction.
Visualize intensity plots by lane (sample) and channel (probe) to get detailed information about your proteins of interest.
The integrated tutorial helps you get the most information out of your analyses. Generate a report of your experiment or export your data to other applications (e.g. Excel) for further analysis.
Product features
Integrated tutorial
Report generator
Automatic saturated pixel detection
Analyze multiple blots or plates per image
Lane creation tools
Molecular size calibration
Quantity calibration tool
Blot and array normalization tool
Module for easy shape selection/deselection
Wide range of data fields to display in measurements
Annotation tools for comments and highlighting of image
AzureSpot Pro can
Automatically detect bands
Correct for background
Calculate molecular weights
Quantify fluorescent signals
Annotate your results
Visualize multiplex analyses
Count colonies
Analyze grids, well-plates and arrays
Export reports
LABELING KITS
AZURESPECTRA LABELING KITS
Label your primary or secondary antibody with a fluorescent dye
Fast and simple antibody labeling
Easy and fast—The fluorescent antibody labeling kit provides the materials necessary to fluorescently label the antibody of your choice in less than 1 hour
Label primary antibodies—use antibodies that your lab has already validated and optimized. Labeled primary antibodies can then be used for direct Westerns.
Label secondary antibodies—secondary antibodies can be labeled for traditional indirect Western blot applications
Choose from 5 dyes—the non-overlapping emission spectra of the fluorophores available for labeling means you can easily perform multiplexing
Perform multiplexing assays quick and easily. Fluorescent Western blot imaged with Azure c600. Secondary antibodies were labeled with the AzureSpectra labeling kit: anti-rabbit with AzureSpectra 700, anti-mouse with AzureSpectra 550, and anti-rat with AzureSpectra 800. Primary antibodies used were rat anti-tubulin, rabbit anti-beta actin, and mouse anti-GAPDH.Simple labeling protocol.
Each kit includes
Sufficient reagents for labeling of 2 x 50 μg of antibody
Labeling Buffer
Dye solution
Quenching solution
Neutralization buffer
Two G-25 columns
Dye
Excitation max. (nm)
Emission max. (nm)
Dye-490
491
515
Dye-550
551
565
Dye-650
653
672
Dye-IR7000
692
709
Dye-IR800
783
800
DEMO KITS
AZURESPECTRA DEMO KIT
New to fluorescent Western blotting?
LET US HELP YOU GET STARTED
Azure’s Fluorescent Western blotting Demo Kit contains everything you need to perform single color fluorescent Westerns using your samples and primary antibodies.
What you need
Your protein sample, resolved by SDS PAGE
Primary antibody against protein of interest
How to use
Run a gel of your sample and transfer to the provided PVDF membrane
Block using Fluorescent Blot Blocking Buffer
Probe using your chosen primary antibody
Wash with Fluorescent Blot Wash Buffer
Incubate with the provided secondary antibody
Wash again with Fluorescent Blot Wash Buffer
Rinse with PBS
Take an image of your fluorescent blot using the provided background quenching sheets
Blots probed with AzureSpectra secondary antibodies and imaged using NIR with an Azure 600. Left: probed with AzureSpectra 800 secondary (green). Right: probed with AzureSpectra 700 (red).
Each kit contains
Enough material for 1 Western blot
9x7cm Low Fluorescence PVDF membrane
10x Fluorescent Blot Washing Buffer, 30mL
1x Fluorescent Blot Blocking Buffer, 30mL
Secondary Antibody, 4μL
PRODUCTS
ORDERING INFORMATION
Protein Gel Electrophoresis
AC2124
AzureRed Fluorescent Protein Stain—fluorescent total protein stain for 1D and 2D gels, sufficient for 20 minigels, 5 ml
Nitrocellulose Transfer Membrane–0.45 μm—pre-cut membrane, 8×10 cm mini vertical gels, ideal for larger proteins, 10 sheets
AC2107
Nitrocellulose Transfer Membrane–0.22 μm—pre-cut membrane, 8×10 cm mini vertical gels, ideal for smaller proteins, 10 sheets
AC2108
Low Fluorescence Western Membrane (PVDF)–0.45 μm—pre-cut PVDF membrane, 10×15 cm vertical gels, 10 sheets
AC2109
Low Fluorescence Western Membrane (PVDF)–0.45 μm—pre-cut PVDF membrane, 13×18 cm vertical gels, 10 sheets
AC2110
Blotting Paper for Western Blotting—pre-cut blotting paper for Western blot transfer, 7×9 cm vertical gels, 60 sheets
AC2127
Azure Transfer Buffer—50x concentrated solution sufficient for 50–100 blots
AC2125
Azure Ponceau Stain—visible reversible total protein stain for proteins transferred to membrane, sufficient for staining 50 blots 9x7cm, 500 ml
Blocking
AC2112
Azure Protein Free Blot Blocking Buffer—protein-free blocking solution (5x concentrate) for immunoblots, 200 ml
AC2190
Azure Fluorescent Blot Blocking Buffer—blocking solution (1X) for fluorescent immunoblots, 500 ml
AC2148
Azure Chemi Blot Blocking Buffer—blocking solution (1X) for chemiluminescent immunoblots, 500 ml
Washing
AC2113
Azure Blot Washing Buffer—immunoblot washing solution 10x concentrate, 500ml
AC2145
Azure Fluorescent Blot Washing Buffer—immunoblot washing solution 10x concentrate, for use with fluorescent secondaries, 500 ml
Blot Accessories
AC2126
Blot Development Folder—transparent plastic sheets to hold blots for imaging (alternative to plastic wrap), 100 pcs
AC2144
Quenching Sheets, small—10 background quenching sheets, for use with fluorescent or chemiluminescent samples (9×12.5 cm)
AC2147
Quenching Sheets, large—10 background quenching sheets, for use with fluorescent or chemiluminescent samples (16×22 cm)
Detection Substrates
AC2101
Radiance—HRP Substrate for CCD 150 ml kit, contains substrate for 1500cm2 membrane
AC2103
Radiance Plus—femtogram HRP Substrate 150 ml kit, contains substrate for 1500cm2 membrane
AC2146
Azure ChemiWriter ECL—a chemiluminescent marker that enables you to write or draw on your transfer membranes, resulting in a chemiluminescent signal on your markings once substrate is added
Kits
AC2140
AzureSpectra rb700/ms800 Western Kit, with Protein Free Block—kit contains materials for 10 Western Blots: PVDF membranes, wash buffer, protein free blocking buffer, secondary antibodies AzureSpectra rb700/ms800
AC2141
AzureSpectra ms700/rb800 Western Kit, with Protein Free Block—kit contains materials for 10 Western Blots: PVDF membranes, wash buffer, protein free blocking buffer, secondary antibodies AzureSpectra ms700/rb800
AC2104
AzureSpectra rb650/ms550 Western Kit, with Protein Free Block—kit contains materials for 10 Western Blots: PVDF membranes, wash buffer, protein free blocking buffer, secondary antibodies rb650/ms550
AC2191
AzureSpectra rb700/ms800 Western Kit, with Fluorescent Block—kit contains materials for 10 Western Blots: PVDF membranes, wash buffer, fluorescent blocking buffer, secondary antibodies AzureSpectra rb700/ms800
AC2192
AzureSpectra ms700/rb800 Western Kit, with Fluorescent Block—kit contains materials for 10 Western Blots: PVDF membranes, wash buffer, fluorescent blocking buffer, secondary antibodies AzureSpectra ms700/rb800
AC2193
AzureSpectra rb650/ms550 Western Kit, with Fluorescent Block—kit contains materials for 10 Western Blots: PVDF membranes, wash buffer, fluorescent blocking buffer, secondary antibodies AzureSpectra rb650/ms550
Stripping Buffer
AC2154
HRP Stripping Buffer—uniformly removes antibodies from developed HRP Western blots so the blot can be reprobed with another set of antibodies
Incubation Trays
AC2120
7×5 cm, opaque black top and bottom—for staining and washing light sensitive gels and membranes, includes 5 trays
AC2121
9×6 cm, opaque black top and bottom—for staining and washing light sensitive gels and membranes, includes 4 trays
AC2122
11×9 cm, opaque black top and bottom—for staining and washing light sensitive gels and membranes, includes 3 trays
AC2123
15.5×10.5 cm, opaque black top and bottom—for staining and washing light sensitive gels and membranes, includes 2 trays
AC2150
7×5 cm, clear—for staining and washing gels and membranes, includes 5 trays
AC2151
9×6 cm, clear—for staining and washing gels and membranes, includes 4 trays
AC2152
11×9 cm, clear—for staining and washing gels and membranes, includes 3 trays
AC2153
15.5×10.5 cm, clear—for staining and washing gels and membranes, includes 2 trays
AzureSpectra 800 secondary antibodies
AC2134
Goat-anti-rabbit—AzureSpectra 800 conjugated secondary antibody for fluorescent Westerns, 250 μl
AC2135
Goat-anti-mouse—AzureSpectra 800 conjugated secondary antibody for fluorescent Westerns, 250 μl
AC2136
Goat-anti-human—AzureSpectra 800 conjugated secondary antibody for fluorescent Westerns, 250 μl
AC2137
Goat-anti-chicken—AzureSpectra 800 conjugated secondary antibody for fluorescent Westerns, 250 μl
AC2138
Goat-anti-rat—AzureSpectra 800 conjugated secondary antibody for fluorescent Westerns, 250 μl
For Westerns – 490—for covalently labeling antibodies with a fluorescent dye. Includes labeling buffer, dye solution, quenching solution, neutralization buffer and two G-25 columns. Each kit includes sufficient reagents to perform two labellings of 50 micrograms of antibody.
AC2186
For Westerns – 550—for covalently labeling antibodies with a fluorescent dye. Includes labeling buffer, dye solution, quenching solution, neutralization buffer and two G-25 columns. Each kit includes sufficient reagents to perform two labellings of 50 micrograms of antibody.
AC2187
For Westerns – 650—for covalently labeling antibodies with a fluorescent dye. Includes labeling buffer, dye solution, quenching solution, neutralization buffer and two G-25 columns. Each kit includes sufficient reagents to perform two labellings of 50 micrograms of antibody.
AC2188
For Westerns – 700—for covalently labeling antibodies with a fluorescent dye. Includes labeling buffer, dye solution, quenching solution, neutralization buffer and two G-25 columns. Each kit includes sufficient reagents to perform two labellings of 50 micrograms of antibody.
AC2189
For Westerns – 800—for covalently labeling antibodies with a fluorescent dye. Includes labeling buffer, dye solution, quenching solution, neutralization buffer and two G-25 columns. Each kit includes sufficient reagents to perform two labellings of 50 micrograms of antibody.
Azure Imaging Systems
AZI600-01
Azure Imager 600
AZI500-01
Azure Imager 500
AZI400-01
Azure Imager 400
AZI300-01
Azure Imager 300
AZI280-01
Azure Imager 280
AZI200-01
Azure Imager 200
CS1000
chemiSOLO Imager
Headquarters: Azure Biosystems, Inc. 6747 Sierra Court, Suite A-B Dublin, CA 94568 United States
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10 minutes
The ANONCHK cookie, set by Bing, is used to store a user's session ID and also verify the clicks from ads on the Bing search engine. The cookie helps in reporting and personalization as well.
bcookie
1 year
LinkedIn sets this cookie from LinkedIn share buttons and ad tags to recognize browser IDs.
cb_user_id
1 year
Clearbit sets this cookie to collect data on visitors. This information is used to assign visitors into segments, making website advertising more relevant.
IDE
1 year 24 days
Google DoubleClick IDE cookies are used to store information about how the user uses the website to present them with relevant ads and according to the user profile.
MUID
1 year 24 days
Bing sets this cookie to recognize unique web browsers visiting Microsoft sites. This cookie is used for advertising, site analytics, and other operations.
NID
6 months
NID cookie, set by Google, is used for advertising purposes; to limit the number of times the user sees an ad, to mute unwanted ads, and to measure the effectiveness of ads.
test_cookie
15 minutes
The test_cookie is set by doubleclick.net and is used to determine if the user's browser supports cookies.
VISITOR_INFO1_LIVE
5 months 27 days
A cookie set by YouTube to measure bandwidth that determines whether the user gets the new or old player interface.
YSC
session
YSC cookie is set by Youtube and is used to track the views of embedded videos on Youtube pages.
yt-remote-connected-devices
never
YouTube sets this cookie to store the video preferences of the user using embedded YouTube video.
yt-remote-device-id
never
YouTube sets this cookie to store the video preferences of the user using embedded YouTube video.
yt.innertube::nextId
never
This cookie, set by YouTube, registers a unique ID to store data on what videos from YouTube the user has seen.
yt.innertube::requests
never
This cookie, set by YouTube, registers a unique ID to store data on what videos from YouTube the user has seen.